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There are 3 - 4 criteria basis which you should finalize a college to pursue B. Sc in Biotechnology.
A government college will be cheaper to pursue and since it will be affiliated to a government university, you are assured of a good education. However, a private college may cost a little more but chances are that infrastructure-wise, a private college may be in a better position.
An affiliated college will mean you get a degree from a recognized board. Autonomous institutes are stand-alone and usually, award their own degrees.
The location is something that you should be comfortable with and having a good infrastructure in college means that you will learn better.
It is up to your discretion to decide which suits you best. Some colleges offering B.Sc in Biotechnology in India include: